Hi,
mojoPortal can run as a root site or it can run in a folder 1 level below root.
It cannot run in a folder and pretend to be a root site. That is just some bogus url forwarding or some feature of your host (my guess is GoDaddy) that tries to make this possible but it is not going to work with mojoPortal. mojoPortal knows it is running in a folder beneath root not in root and the trick by the host isn't going to fool it into thinking otherwise.
Best,
Joe