Hi,
I tried your skin on my local machine and it looks correct to me other than the flash movie isn't working because you have it commented out in layout.master.
If it doesn't work correctly in your environment then you are probably running in Medium Trust hosting and you need to copy the theme.skin file from the skin folder into /App_Themese/default as discussed on the bottom of this page:
http://www.mojoportal.com/creating-skins-from-artisteer-html-templates.aspx
When designing skins for mojoPortal, it is best to use a 3 column layout in Artisteer also as mentioned in the above linked article.
Hope it helps,
Joe